feat(integration): add status reporting

docs/reference/integrations.md

@@ -123,6 +123,20 @@ specify integration upgrade [<key>]
 
 Reinstalls an installed integration with updated templates and commands (e.g., after upgrading Spec Kit). Defaults to the default integration; if a key is provided, it must be one of the installed integrations. Detects locally modified files and blocks the upgrade unless `--force` is used. Stale files from the previous install that are no longer needed are removed automatically. Shared templates stay aligned with the default integration even when upgrading a non-default integration.
 
+## Diagnose Integration State
+
+```bash
+specify integration doctor
+specify integration doctor --json
+```
+
+Inspects the current project's integration state without changing files. The
+diagnostic report includes the default integration, installed integrations,
+multi-install safety, missing managed files, modified managed files, shared
+Spec Kit infrastructure health, unchecked manifests, and any manifest or
+state-file problems. The JSON form is intended for CI and coding agents that
+need stable machine-readable diagnostics.
+
 ## Integration-Specific Options
 
 Some integrations accept additional options via `--integration-options`:

src/specify_cli/__init__.py

@@ -1615,6 +1615,67 @@ def integration_list(
         console.print("Install one with: [cyan]specify integration install <key>[/cyan]")
 
 
+def _print_integration_doctor_report(report: dict[str, Any]) -> None:
+    status = report["status"]
+    status_label = {
+        "ok": "[green]OK[/green]",
+        "warning": "[yellow]WARNING[/yellow]",
+        "error": "[red]ERROR[/red]",
+    }.get(status, status.upper())
+    installed = report.get("installed_integrations") or []
+
+    console.print(f"Integration state: {status_label}")
+    console.print(f"Default integration: {report.get('default_integration') or 'none'}")
+    console.print(f"Installed integrations: {', '.join(installed) if installed else 'none'}")
+    console.print(f"Multi-install safe: {'yes' if report.get('multi_install_safe') else 'no'}")
+    console.print(f"Shared templates aligned to: {report.get('shared_templates_aligned_to') or 'none'}")
+    console.print(f"Modified managed files: {report.get('modified_managed_files', 0)}")
+    console.print(f"Missing managed files: {report.get('missing_managed_files', 0)}")
+    console.print(f"Unchecked manifests: {report.get('unchecked_manifests', 0)}")
+
+    findings = report.get("findings") or []
+    if not findings:
+        return
+
+    console.print()
+    console.print("[bold]Findings:[/bold]")
+    for item in findings:
+        severity = item.get("severity", "")
+        severity_label = {
+            "error": "[red]error[/red]",
+            "warning": "[yellow]warning[/yellow]",
+        }.get(severity, severity)
+        prefix = f"- {severity_label} {item.get('code', '')}"
+        if item.get("integration"):
+            prefix += f" ({item['integration']})"
+        console.print(f"{prefix}: {item.get('message', '')}", soft_wrap=True)
+        if item.get("suggestion"):
+            console.print(f"  Suggestion: {item['suggestion']}", soft_wrap=True)
+
+
+@integration_app.command("doctor")
+def integration_doctor(
+    json_output: bool = typer.Option(
+        False,
+        "--json",
+        help="Emit machine-readable integration diagnostics.",
+    ),
+):
+    """Diagnose the current project's integration state without changing files."""
+    from .integration_doctor import diagnose_integration_project
+
+    project_root = _require_specify_project()
+    report = diagnose_integration_project(project_root)
+
+    if json_output:
+        typer.echo(json.dumps(report, indent=2))
+    else:
+        _print_integration_doctor_report(report)
+
+    if report["status"] == "error":
+        raise typer.Exit(1)
+
+
 @integration_app.command("install")
 def integration_install(
     key: str = typer.Argument(help="Integration key to install (e.g. claude, copilot)"),